Archives


- Beowulf
- Beowulf Announce
- Scyld-users
- Beowulf on Debian

[Beowulf] NWChem 5.1.1 + Infiniband OFED 1.3 + GA 4.1.1

Many of your questions may have already been answered in earlier discussions or in the FAQ. The search results page will indicate current discussions as well as past list serves, articles, and papers.

Search

Joshua mora acosta joshua_mora at usa.net
Wed Apr 22 11:10:25 PDT 2009


Hello
I am trying to get to work NWChem 5.1.1 + Infiniband OFED 1.3 + GA 4.1.1 using
HPMPI (or any other MPI) and PGI or any other MPI.
I get the well known problem of not working over the network.
Here you have the configuration I am using just in case someone spots the
error.
It runs fine in node but not across the network.

Thanks,
Joshua

user1 at amdqc01:~/Chem_work/nwchem-5.1.1> more compile_nwchem.csh
#!/bin/csh
set echo

#module load hp-mpi
#module load pgi64/7.2

setenv LARGE_FILES TRUE
setenv LIB_DEFINES "-DDFLT_TOT_MEM=16777216"
setenv TCGRSH /usr/bin/ssh
setenv NWCHEM_TOP "$HOME/Chem_work/nwchem-5.1.1"
setenv NWCHEM_TARGET "LINUX64"
setenv TARGET "LINUX64"
setenv SCRATCH_DEF_DIR "\'/tmp\'"
setenv F77 pgf77
setenv CPP pgcpp
setenv CXX pgcpp
setenv FC pgf90
setenv CC pgcc
setenv NWCHEM_MODULES "all"
setenv USE_MPI y
setenv USE_MPIF y
setenv LIBMPI "-lmpi -L /usr/lib64 -libumad -lpthread"
setenv MPI_LOC /opt/hpmpi
setenv MPI_LIB /opt/hpmpi/lib/linux_amd64
setenv MPI_INCLUDE /opt/hpmpi/include
setenv HAS_BLAS yes
setenv BLAS_I8 yes
setenv BLAS_LIB "-L /opt/acml4.2.0/pgi64_int64/lib -lacml -lacml_mv"
setenv BLASOPT "-L /opt/acml4.2.0/pgi64_int64/lib -lacml -lacml_mv"
setenv ARMCI_NETWORK OPENIB
setenv MA_USE_ARMCI_MEM yes
setenv IB_HOME /usr/
setenv IB_INCLUDE /usr/include
setenv IB_LIB /usr/lib64
setenv LD_LIBRARY_PATH /opt/acml4.2.0/pgi64_int64/lib:$LD_LIBRARY_PATH
setenv NWCHEM_NWPW_LIBRARY /sn01/user1/home/NWChem/data/
setenv NWCHEM_BASIS_LIBRARY_PATH /sn01/user1/home/NWChem/data/libraries/
cd src
make FC=pgf90 nwchem_congig >& make_config.log
make FC=pgf90 all >& make.log
echo Done






More information about the Beowulf mailing list