[Beowulf] RE: OT: Announcing MPI-HMMER
landman at scalableinformatics.com
Wed Jan 3 17:48:20 PST 2007
Chris Samuel wrote:
> On Thursday 04 January 2007 04:27, David Mathog wrote:
>> Joe and I aparently exist in parallel software universes ;-).
> Being MPI means it can take advantage of high speed interconnects (e.g.
> building it with MPICH-GM to use native Myrinet). Of course whether that
> would benefit HMMER is something I don't know!
It does. The code does very nicely with low latency (and low OS
jitter). XD1's, while discontinued, are sweet boxes.
Joseph Landman, Ph.D
Founder and CEO
Scalable Informatics LLC,
email: landman at scalableinformatics.com
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