Parallel Charmm and RedHat 7.1
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Tru Huynh tru at pasteur.frThu Jun 21 03:01:39 PDT 2001
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Bogdan Costescu wrote: > > On Thu, 21 Jun 2001, David Chalmers wrote: > > > I can get Charmm to run using mpirun on a single processor but it dies > > (or is killed) with two. Can anybody help me with a pointer to where I > > am going wrong? > 1) are you sure that you compiled a parallel CHARMM: PARALLEL/PARAFULL/MPI/CMPI keywords in the pref.dat file? 2) what gives the following command? mpirun -np 2 charmm < basic.inp with basic.inp: * set n ?numnode stop You should have something like: CHARMM> set n ?numnode RDCMND substituted energy or value "?NUMNODE" to "2" Parameter: N <- "2" 3) the latest lam-mpi is 6.5.2, you might consider upgrading ;) Best regards, Tru -- Dr Tru Huynh | Bioinformatique Structurale mailto:tru at pasteur.fr | tel/fax +33 1 45 68 87 37/19 Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France
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