Archives


- Beowulf
- Beowulf Announce
- Scyld-users
- Beowulf on Debian

BLAST and other parallel sequence comparison programs

Many of your questions may have already been answered in earlier discussions or in the FAQ. The search results page will indicate current discussions as well as past list serves, articles, and papers.

Search

Martin Siegert siegert at sfu.ca
Sat Jul 14 13:42:29 PDT 2001


On Sat, Jul 14, 2001 at 03:30:45PM -0500, W Bauske wrote:
> Martin Siegert wrote:
> > 
> > On Fri, Jul 13, 2001 at 11:28:09PM -0400, William Pearson wrote:
> > >
> > > To my knowledge, there is no generally available parallel implementation
> > > of BLAST.
> > 
> > There is BLACS and PBLAS (part of ScaLAPACK).
> > All available at www.netlib.org.
> > 
> 
> Martin,
> 
> I think he's talking about DNA sequencing code, not BLAS
> codes.

Oops. I guess I wasn't quite awake yet. Yes, I did mix up BLAS and BLAST.
Sorry for that.

Martin




More information about the Beowulf mailing list